Janeway pursues Ransom with a vengeance - dismissing the interests of her crew, relieving Chakotay of duty, and threatening the life of an Equinox crewmember in her effort to bring the renegade captain to justice.

Three former Borg drones from Seven of Nine's unimatrix track her down, hoping she can help them break free from the neural link that ties them together.

Torres has a near-death experience in a shuttle, and travels on the Klingon Barge of the Dead to Stovocor, where she must confront her rejection of her Klingon heritage and  fight to save her mother from spending eternity in Hell, even if she must lose her own soul.  She comes away from the experience stronger and with a new respect for her mother.

The Doctor has fantasies of running the ship and being desirable to all its women, but when aliens tap into his daydreams, he must work to make them real.

Tom Paris falls in love with a ship that connects to him neurogenically, then appears to him as an attractive woman. Becoming addicted, Tom leaves Voyager with "Alice" leaving the crew to figure out a method of countering the addiction.

After an alien attack strips him of his Vulcan memories, inhibitions and control, Tuvok turns to Neelix for help and insight only to experience a completely uncharacteristic chain of events.

When Seven of Nine awakes a race of dormant aliens in stasis for centuries, an ancient struggle to control subspace is revived as well, with Voyager caught firmly in the middle.

Voyager encounters an anomaly which swallowed up the command module of the first manned Mars expedition in 2032. Chakotay, Paris and Seven set out to rescue the module but soon end up caught in the same anomaly which crippled the ancient vessel decades before.

When Seven of Nine downloads the entire Voyager database, she discovers conspiracies involving Starfleet, the Maquis, and the Caretaker. She attempts to create mistrust between the Captain and Chakotay, but they discover what she is doing in time to cooperate and use an alien catapult to get Voyager closer to home.

Deanna Troi visits Reginald Barclay, who has an idea about how to contact the Voyager crew, but Admiral Paris, thinks he has relapsed  into holo-addiction.

Tom Paris creates a holo-program to help the crew relax.  His recreation of an Irish village complete with guesthouse is a welcome distraction.  Janeway falls in love with a holocharacter, the owner of the establishment.  But comes to her senses and deletes him when she learns how obsessed she's become.

Voyager is trapped in the atmosphere of a planet with a primitive civilization, but it doesn't stay primitive for long, developing weapons that can destroy Voyager before the ship can get away from the rapidly evolving planet. At the same time, the Doctor beams down to investigate the culture and ends up spending the equivalent of a lifetime there even marrying and raising a son.

An advanced race discovers music via the Doctor's singing and begins to treat him like a superstar. When the Doctor's ego grows too large, he abruptly announces he's leaving the ship, and cuts all ties with his former crewmates. Discovering that fame is fickle he returns much humbled.

Voyager crewmembers return from an away mission experiencing repressed memories of having participated in a massacre. They soon realise all is not as it seems when the rest of the crew start to experience the same vivid thoughts...

When Seven of Nine and Tuvok are captured on shore leave, Seven finds herself forced to face down a devastatingly powerful opponent in a match of Tsunkatse, a game which is played to the death.

When Voyager encounters a derelict Borg Cube, a group of partially assimilated Borg youngsters try to seize the ship's deflector dish and Seven of Nine is left to negotiate with them.

The people of Fair Haven develop enough sentience to accuse Voyager crewmembers of witchcraft; when Janeway seems more worried about saving Michael Sullivan than Paris and Kim, Torres reminds the captain that while her lover can be reprogrammed, Tom and Harry can't.

A dead crewmember with whom Harry Kim was once in love returns in a body reanimated by aliens. However Lindsay Ballard must face a difficult decision when her alien family return to claim her.

When Voyager tracks down the parents of the young ex-Borg drone Icheb, Seven of Nine has trouble trusting the boy's parents to care for him. Her concerns soon become all too clear when they attempt to send Icheb back to the collective.

Janeway goes on an away mission in the Delta Flyer with three misfit crewmembers from the lower decks who, according to Seven, are constant underperformers. When the mission runs into difficulty, Janeway's leadership skills are needed more than ever.

A troupe of alien con artists pose as Janeway, Chakotay and Tuvok in their mock up "Delta Flyer" in order to take advantage of other species.  They use Voyager's good name and the Captain's reputation for compassion, to cheat local traders and leave a trail of enemies behind for Voyager to encounter..

Torres crashes on an alien world and becomes the inspiration for a playwright trying to inspire peace for his people who are embroiled in a bloody war between factions.

The return of a vengeful Kes sparks disaster for Voyager. This Kes is blaming Janeway for her premature evolution and the loss of her youth and will stop at nothing to take revenge on the crew.

Learning that his inventor is dying, the Doctor has his program transmitted back to the Alpha Quadrant to try to save him. There he meets Troi and Barclay who, having already tried to convince Zimmerman to seek treatment, are doubtful about the chance of success from the Doctor.

As Voyager prepares to approach a nebula and must turn off all power, Neelix tells ghost stories to the Borg children who cannot regenerate, without power in their alcoves.  The story, Neelix says is a explanation of why Deck Twelve is off limits.  He tells of a creature living there who had attempted to take over the ship.  Then he tells the children that the story was fiction.  However after they are safely regenerating again Voyager releases the creature to its new nebula home.

Seven of Nine encounters a past lover in a secret Borg dreamworld where drones maintain their individuality; Janeway seeks to foster a resistance movement among them.